Polyploid genomes analyzed

 

Event	Species	Genome reference	Genome source/Accession
At-a	Arabidopsis thaliana	(1)	CoGe(2): 20342
	Arabidopsis lyrata	(3)	CoGe(2): 3068
	Capsella rubella	(4)	CoGe(2): 16754
	Shrenkiella parvula	(5)	CoGe(2): 12384
	Eutrema salsugineum	(6)	CoGe(2): 19492
	Aethionema arabicum	(7)	CoGe(2): 23428
Apple/Pear WGD	Malus domestica	(8)	Genome Database for Rosaceae (9)
	Malus baccata	(10)
	Malus sieversii	(11)
	Pyrus bretschneider	(12)
	Pyrus communis	(13)
Brassica WGT	Brassica rapa	(14)	CoGe(2): 24668
	Brassica oleracea	(15)	CoGe(2): 26018
	Sinapis alba	Unpublished	CoGe(2): 33284
	Crambe hispanica	(16)	CoGe(2): 58014
Carp WGD	Carassius auratus	(17)	Ensembl release 107(18)
	Cyprinus carpio	(19)
Grass r	Brachypodium distachyon	(20)	CoGe(2): 25040
	Oropetium thomaeum	(21)	CoGe(2): 25799
	Setaria italica	(22)	CoGe(2): 28806
	Sorghum bicolor	(23)	CoGe(2):31607
	Oryza sativa	(24)	CoGe(2): 16888
Legume WGD	Cajunus cajan	(25)	CoGe(2): 12470
	Cicer arietinum	(26)	CoGe(2): 32935
	Medicago truncatula	(27)	CoGe(2): 28969
	Phaseolus vulgaris	Unpublished	CoGe(2): 37301
TGD	Astyanax mexicanus	(28)	Ensembl release 84(18)
	Danio rerio	(29)
	Takifugu rubripes	(30)
	Oryzias latipes	(31)
	Xiphophorus maculatus	(32)
	Gasterosteus aculeatus	(33)
	Tetraodon nigroviridis	(34)
	Oreochromis niloticus	(35)
Salmon WGD	Salmo salar	(36)	NCBI assembly: GCF_000233375.1
	Oncorhynchus mykiss	(37)	NCBI assembly:  GCF_002163495.1
	Oncorhynchus kisutch	Unpublished	NCBI assembly:  GCF_002021735.1F_002021735.1
	Oncorhynchus tshawytscha	(38)	NCBI assembly:  GCF_002872995.1
Paramecium WGQ/WGD	Paramecium tetraurelia	(39)	ParameciumDB (40)
	Paramecium biaurelia	Unpublished	ParameciumDB (40), v. 1-4
	Paramecium sexaurelia	Unpublished	ParameciumDB (40), v AZ8-4
Nematode triploidy	Meloidogyne arenaria	(41)	https://meloidogyne.inrae.fr
	Meloidogyne incognita	(41)
	Meloidogyne javanica	(41)
Solenaceae WGT	Capsicum annuum	(42)	Sol Genomes Network (43)
	Solanum lycopersicum	(44)
	Petunia axillaris	(45)	CoGe(2): 54659
	Solanum melongena	(46)	CoGe(2): 57947
Yeast WGD	Saccharomyces cerevisiae	(47)	YGOB (48, 49)
	Saccharomyces kudriavzevii	(50)
	Saccharomyces uvarum	(50)
	Candida glabrata	(51)
	Naumovozyma castellii	(52)
	Naumovozyma dairenensis	(52)
	Kazachstania africana	(52)
	Kazachstania  naganishii	(52)
	Vanderwaltozyma polyspora	(53)
	Tetrapisispora phaffii	(52)
	Tetrapisispora blattae	(52)

 

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