These data describe our analyses of 10 polyploid genomes with POInT Each directory is specific to an event and contains: - A TAR file with the genome order data for each genome and an estimated ancestral genome order for POInT - The inferred/estimated phylogenetic topology used - An estimate of the best orthology relationship for each "pillar" of genes analyzed and an associated confidence value - A TAR file containing the coding regions of all of the genes analyzed (1/pillar, FASTA format) - A directory with individual FASTA files for each pillar (primarily used by the browser itself to facilitate direct downloads for individual pillars) There is also a directory with the loss models used in our analyses (Models). In addition, the root directory contains a TAR file containing all inferred RGLs for every pair of taxa in our analyses.